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PUBLICATIONS

(* graduate student author, ** undergraduate author, ***postdoc)

(PDFs available upon request to sarahcoh@sfsu.edu, or you may find PDF downloads of older papers at this website: http://biology.sfsu.edu/faculty/sarah-cohen, if you scroll to the bottom of the page).

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  • Nydam M, Lemmon A, Lemmon E, Ziegler K, Cohen CS, Palomino-Alvarez L, and C. Gissi. 2023. Phylogenomics and systematics of botryllid ascidians, and implications for the evolution of allorecognition. Front. Ecol. Evol. Sec. Evolutionary Developmental Biology. Vol 11 doi: 10.3389/fevo.2023.1214191

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  • Hess RA, Erickson OA, Cole RB, Isaacs JM, Alvarez-Clare S, Arnold J, Augustus-Wallace A, Ayoob JC, Berkowitz A, Branchaw J, Burgio KR, Cannon CH, Ceballos RM, Cohen CS, Coller H, Disney J, Doze VA, Eggers MJ, Ferguson EL, Gray JJ, Greenberg JT, Hoffmann A, Jensen-Ryan D, Kao RM, Keene AC, Kowalko JE, Lopez SA, Mathis C, Minkara M, Murren CJ, Ondrechen MJ, Ordoñez P, Osano A, Padilla-Crespo E, Palchoudhury S, Qin H, Ramírez-Lugo J, Reithel J, Shaw CA, Smith A, Smith RJ, Tsien F, Dolan EL. Virtually the Same? Evaluating the Effectiveness of Remote Undergraduate Research Experiences. CBE Life Sci Educ. 2023 Jun;22(2):ar25. doi: 10.1187/cbe.22-01-0001. PMID: 37058442; PMCID: PMC10228262.

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  • Halpern B, Boettiger C, Dietze M, Gephart J, Gonzalez P, Grimm N, Groffman P, Gurevitch J, Hobbie S, Komatsu K, Kroeker K, Lahr H, Lodge D, Lortie C, Lowndes J, Micheli F, Possingham H, Ruckelshaus M, Scarborough C, Wood C, Wu G, Aoyama L, Arroyo E, Bahlai C, Beller E, Blake R, Bork K, Branch T, Brown N, Brun J, Bruna E, Buckley L, Burnett J, Castorani M, Cheng S, Cohen S, Couture J, Crowder L, Dee L, Dias A, Diaz‐Maroto I, Downs M, Dudney J, Ellis E, Emery K, Eurich J, Ferriss B, Fredston A, Furukawa H, Gagné S, Garlick S, Garroway C, Gaynor K, González A, Grames E, Guy‐Haim T, Hackett E, Hallett L, Harms T, Haulsee D, Haynes K, Hazen E, Jarvis R, Jones K, Kandlikar G, Kincaid D, Knope M, Koirala A, Kolasa J, Kominoski J, Koricheva J, Lancaster L, Lawlor J, Lowman H, Muller‐Karger F, Norman K, Nourn N, O'Hara C, Ou S, Padilla‐Gamino J, Pappalardo P, Peek R, Pelletier D, Plont S, Ponisio L, Portales‐Reyes C, Provete D, Raes E, Ramirez‐Reyes C, Ramos I, Record S, Richardson A, Salguero‐Gómez R, Satterthwaite E, Schmidt C, Schwartz A, See C, Shea B, Smith R, Sokol E, Solomon C, Spanbauer T, Stefanoudis P, Sterner B, Sudbrack V, Tonkin J, Townes A, Valle M, Walter J, Wheeler K, Wieder W, Williams D, Winter M, Winterova B, Woodall L, Wymore A, Youngflesh C. Priorities for synthesis research in ecology and environmental science. Ecosphere. 2023 January 11; 14(1):-. Available from: https://onlinelibrary.wiley.com/doi/10.1002/ecs2.4342 DOI: 10.1002/ecs2.4342
     

  • Reyes R, Pham O, Fergusson R, Ceberio N, Clark C, Cohen C, Fuse M, Pennings P. SCIP: a self-paced summer coding program creates community and increases coding confidence. [Preprint]. 2022 December 27. DOI: 10.1101/2022.12.27.52195
     

  • Duncan M, Chow B, Myron K, Stone J, Hubbell M, Schriock E, Hunt C, Khtikian K, Cohen S. First report of genetic data from two invasive Watersipora (Bryozoa) species in the central California coast rocky intertidal. Aquatic Invasions. 2022; 17(2):136-152. Available from: https://www.reabic.net/aquaticinvasions/2022/issue2.aspx DOI: 10.3391/ai.2022.17.2.01
     

  • Erickson O, Cole R, Isaacs J, Alvarez-Clare S, Arnold J, Augustus-Wallace A, Ayoob J, Berkowitz A, Branchaw J, Burgio K, Cannon C, Ceballos R, Cohen CS, Coller H, Disney J, Doze V, Eggers M, Farina S, Ferguson E, Gray J, Greenberg J, Hoffman A, Jensen-Ryan D, Kao R, Keene A, Kowalko J, Lopez S, Mathis C, Minkara M, Murren C, Ondrechen MJ, Ordonez P, Osano A, Padilla-Crespo E, Palchoudhury S, Qin H, Lugo JR, Reithel J, Shaw C, Smith A, Smith R, Summers A, Tsien F, and E Dolan. 2022. How do we do this at a distance? A descriptive study of remote undergraduate research programs during COVID-19. CBE-Life Sciences Education 21(1). https://www.lifescied.org/doi/10.1187/cbe.21-05-0125
     

  • Nydam M.L., Lemmon A.R, Cherry J.R., Kortyna ML, Clancy DL*, Hernandez C*, Cohen CS. 2021. Phylogenomic and morphological relationships among the botryllid ascidians (Subphylum Tunicata, Class Ascidiacea, Family Styelidae). Scientific Reports, 11(1):8351.  doi: 10.1038/s41598-021-87255-2.

 

  • Melroy, L.M.* and CS Cohen. 2021. Temporal and spatial variation in population structure among brooding sea stars in the genus Leptasterias. Ecology and Evolution. http://doi.org/10.1002/ece3.7283 .

 

 

 

  • Weinberg RB*, Clancy DL*, Cohen CS. 2019. Genotypic variability following fusion in the invasive colonial tunicate Didemnum vexillum. Invertebr Biol. 2019;00:e12263. https://doi.org/10.1111/ivb.12263

 

  • Caballero S., Dove V., Jackson-Ricketts J., Junchompoo C., Cohen S, Hines E. 2018. Mitochondrial DNA diversity and population structure in the Irrawaddy dolphin (Orcaella brevirostris) from the Gulf of Thailand and the Mekong River. Marine Mammal Science, DOI: 10.1111/mms.12518.

 

 

  • Melroy L.*, Smith R**., and CS Cohen. 2017. Phylogeography of direct-developing sea stars in the genus Leptasterias in relation to San Francisco Bay outflow in central California. Marine Biology 64: 152- .DOI: 10.1007/s00227-017-3184-z
    (Note: shared first authorship between Melroy and Smith)

 

 

  • Cohen, CS. 2016. Revision of the Urochordata section in Brusca, RC and Shuster, SM, Chapter 27, Phylum Chordata: Cephalochordata and Urochordata. Invertebrates, 3rd edition, Sinauer Press.

 

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  • Ort BS***, Cohen CS, Boyer KE, Reynolds LK, Tam SM***, Wyllie-Echeverria S. 2014. Conservation of Eelgrass (Zostera marina) Genetic Diversity in a Mesocosm-Based Restoration Experiment. PLoS ONE 9(2): e89316. doi:10.1371/journal.pone.0089316
     

  • Goulding T. C*., Cohen, CS. 2014. Phylogeography of a marine acanthocephalan: lack of cryptic diversity in a cosmopolitan parasite of mole crabs. Journal of Biogeography, 41: 965–976.  doi: 10.1111/jbi.12260
     

  • Craig, C*., W. Kimmerer, C.S. Cohen. 2014. A DNA-based method for investigating feeding by copepod nauplii. J. Plankton Research, 36 (1): 271-275. published 10.14.2013, https://doi.org/10.1093/plankt/fbt104
     

  • Ort, B***, Cohen, CS, Boyer, KE, Wyllie-Echeverria, S. 2012. Genetic diversity within and among eelgrass (Zostera marina) beds in the San Francisco Bay. Journal of Heredity, doi: 10.1093/jhered/ess022.
     

  • Cohen, C.S., McCann, L, Davis, T., Shaw, L., Ruiz, G. 2011. Discovery and significance of the colonial tunicate Didemnum vexillum in Alaska. Aquatic Invasions: 6 (3): 263-271. doi: 10.3391/ai.2011.1
     

  • Robinson, G. and 19 authors including C. Sarah Cohen. 2010.  Empowering 21st Century Biology. BioScience 60:11, 923-930
     

  • Nacci, D.,M. Huber, D. Champlin, S. Jayaraman, S. Cohen, E. Gauger**, A. Fong*, M. Gomez-Chiarri.  2009. Trade-offs of contemporary evolution: pathogen susceptibility in a chemically-tolerant estuarine fish population. Environmental Pollution, 157: 857- 864.
     

  • Eberl, R.*, S. Cohen, F. Cipriano, and E. Carpenter. 2007. Genetic diversity and population structure of the pelagic harpacticoid copepod Macrosetella gracilis on rafts of the bloom-forming cyanobacterium Trichodesmium spp. Aquatic Biology, 1: 33-43.
     

  • Burnett, K., and 25 authors including S. Cohen. 2007. Fundulus as the premier teleost model in environmental biology: opportunities for new insights using genomics. Comparative Biochemistry and Physiology, Part D 2, 257-286.
     

  • Cohen, S., J. Tirindelli*, M. Gomez-Chiarri, D. Nacci. 2006. Functional implications of Major Histocompatibility (MH) variation using estuarine fish populations.Integrative and Comparative Biology 46 (6): 1016-1029.
     

  • Cohen, S. 2002. MHC variation in natural populations of an estuarine fish: high levels of variation and relationship to severe environmental stress. Molecular Biology and Evolution 19 (11): 1870-1880.   https://academic.oup.com/mbe/article/19/11/1870/1012454











     

  • Cohen, S. and D. Nacci. 2002. Effects of dioxin-like compound (DLC) contamination on an estuarine fish species: adaptive changes at specific loci. Conference proceedings, US/Vietnam Scientific Conference on Agent Orange/Dioxins, March 3-6, 2002, Hanoi, Vietnam.
     

  • Saito, Y., Shirae, M., Okuyama, M., and S. Cohen. 2001. Phylogeny of botryllid ascidians. In, "The Biology of Ascidians", ed H. Sawada, H. Yokosawa, CC Lambert, Springer, Tokyo, pp. 315-320.
     

  • Cohen, S. 2000. Botryllid ascidian invasions: genetic and behavioral evidence for multi-species invasions and character divergence following introductions. In, Proceedings of the First National Conference on Marine Bioinvasions, MIT Sea Grant.
     

  • Cohen, S., Saito, Y. and I. Weissman. 1998. Evolution of allorecognition in botryllid ascidians inferred from a molecular phylogeny. Evolution 52(3):746-756. 
     

  • Cohen, S. 1996. The effects of contrasting modes of fertilization on levels of inbreeding in the marine invertebrate genus Corella. Evolution 50(5): 1896-1907. 
     

  • Cohen, C. S. and R. Strathmann. 1996. Embryos at the edge of tolerance: effects of environment and structure of egg masses on supply of oxygen to embryos. Biol. Bull. 190: 8-15. https://www.journals.uchicago.edu/doi/epdf/10.2307/1542671
     

  • Dethier, M., Graham, E., Cohen, S., and L. Tear. 1993. Visual and random-point percent cover estimations:  "Objective is not always better." Mar. Ecol. Prog. Ser. 96: 93-100.
     

  • Petersen, C., Warner, R., Cohen, S., Hess, H. and A. Sewell. 1992. Variation in pelagic fertilization rates:  Implications for production estimates, mate choice, and the spatial distribution of mating. Ecology 73: 391-401.
     

  • Cohen, S. 1990. Outcrossing in field populations of two species of self-fertile ascidians. J. Exp. Mar. Biol. Ecol. 140: 147-158.
     

  • Hess, H., Bingham, B., Cohen, S., Grosberg, R., Jefferson, W. and L. Walters. 1988. The scale of genetic differentiation in Leptosynapta clarki (Heding), an infaunal brooding holothuroid. J. Exp. Mar. Biol. Ecol. 122: 187-194.
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